Optical characteristic of humic acids from lake sediments by excitation-emission matrix fluorescence with PARAFAC model

Journal of Soils and Sediments - The study aimed to find out whether fluorescence parameters of humic acids (HA), obtained from excitation-emission matrix (EEM) fluorescence spectra, could be used...     

Fructan-Enriched Diet Increases Bone Quality in Female Growing Rats at Calcium Deficiency

This study was designed to determine the effect of feeding female rats with low-calcium diet containing one of three fructan sources (Jerusalem artichoke, yacon, Beneo Orafti Synergy1), on selected bone parameters. Growing Wistar rats were fed modified AIN-93 G diet enriched in fructan sources (8%), added alone or as a strawberry sorbet ingredient. Two of eight groups were a validation model, where the positive control group was fed with recommended calcium dose in the diet (RCD), and negative one – with low calcium diet (LCD). After 12 weeks, femoral Ca content, bone densitometry, architecture and hardness were examined. The positive effects on femoral Ca content and cortical thickness, area and content in distal part of bone was observed after feeding animals diet enriched in Jerusalem artichoke sorbet. Beneficial action on other bone tomographic parameters (particularly trabecular volumetric bone mineral density) in this part of femur were associated mainly with the consumption of the diet with sorbet containing yacon. Our results showed an important role of diet containing frozen strawberry desserts enriched in fructan sources in the maintenance of healthy bones of growing organism. It may suggest possible synergisms between fructans and bioactive substances of strawberry.     

Evaluation of zebrafish (Danio rerio) as an animal model for the viral infections of fish

Zebrafish (Danio rerio) is a laboratory model organism used in different areas of biological research including studies of immune response and host–pathogen interactions. Thanks to many biological tools available, zebrafish becomes also an important model in aquaculture research since several fish viral infection models have been developed for zebrafish. Here, we have evaluated the possible use of zebrafish to study infections with fish viruses that have not yet been tested on this model organism. In vitro studies demonstrated that chum salmon reovirus (CSV; aquareovirus A) and two alloherpesviruses cyprinid herpesvirus 1 (CyHV‐1) and cyprinid herpesvirus 3 (CyHV‐3) are able to replicate in zebrafish cell lines ZF4 and SJD.1. Moreover, CSV induced a clear cytopathic effect and up‐regulated the expression of antiviral genes vig‐1 and mxa in both cell lines. In vivo studies demonstrated that both CSV and CyHV‐3 induce up‐regulation of vig‐1 and mxa expression in kidney and spleen of adult zebrafish after infection by i.p. injection but not in larvae after infection by immersion. CyHV‐3 is eliminated quickly from fish; therefore, virus clearing process could be evaluated, and in CSV‐infected fish, a prolonged confrontation of the host with the pathogen could be studied.     

Pathogenic and genetic diversity of Puccinia triticina from triticale in Poland between 2012 and 2015

Variation among Puccinia triticina isolates collected from triticale in Poland between 2012 and 2015 was studied based on virulence and simple sequence repeat (SSR) markers. Two hundred and forty-two single-uredinial isolates from four geographically separated locations were tested for virulence against 33 near-isogenic Thatcher lines containing known Lr resistance genes, and their molecular genotypes were characterized with 34 SSR markers. Structure and relationships of the regional and annual populations of P. triticina were analysed using an assignment-based approach for both the virulence and SSR data. The molecular marker analysis was based on two different models of SSR evolution: the stepwise mutation model with a variable mutation rate (SMMv) and the infinite alleles model (IAM). A highly significant deviation from Hardy–Weinberg equilibrium among SSR genotypes, a high proportion of heterozygotes, and a moderate association of relationships between virulence phenotypes and SSR genotypes were consistent with the occurrence of clonal lineages of related races within the population. While the results suggest that genetic drift and mutation affect variation within the pathogen population, it seems that migration has the most significant role in shaping the population structure of P. triticina occurring on triticale in Poland.     

Recovery in soil cover and vegetation structure after ancient landslide in mountain fens under Caltho-Alnetum community and response of soil microarthropods (Hexapoda: Collembola) to natural restoration process

Purpose

The objective of this study was to determine the long-term environmental changes induced by ancient landslide in the mountain fen. Attempts were made to demonstrate the progress of the soil cover restoration process about 200 years after the landslides and associated with changes in vegetation and soil microarthropod biodiversity and occurrence pattern associated with the restoration of soil cover.

Material and methods

The study covered mountain fen of the Caltho-Alnetum in the Babiogórski National Park in Outer Flysch Carpathians, Poland, where ancient landslide deposits are causing disturbance in fen hydrologic regime and over time related to various rate of fen area natural restoration processes. The drill test has been used to assess changes in layering and thickness of the fen soils. The following soil parameters, such as pH and total organic carbon content, were determined at each distinguish layer. The diversity and distribution pattern of soil microarthropods, represented by Collembola, was examined in two parts of the fen: restored and not-restored. The soil parameters, such as pH, electrical conductivity, total exchangeable base, total organic carbon, and nitrogen content, were determined in the soil samples simultaneously. The assessment of the vegetation structure recovery within studied mountain fen after landslide was referred to average parameters of the community completed for other natural mountain fens under the Caltho-Alnetum community. The research results were statistically verified.

Results and discussion

The test drillings showed that landslides change soil layering, site-specific soil properties of mountain fen such as chemistry (the statistically significant differences were noted only in the case of total organic carbon content), vegetation structure, and soil microarthropod communities. By changing site-specific conditions, landslides influence on the biodiversity and peatland ecosystems functioning.

Conclusion

Our results clearly demonstrate that the landslide itself initiated a complex and lengthy process of changes in biological aspects of peatlands including the biodiversity of the underground fauna and plant community. Soil microarthropod communities represented by Collembola can be used as a good indicator of mountain fen restoration process.

     

Barley varieties in semi‐controlled and natural conditions—Response to water shortage and changing environment

The yield potential of 60 spring barley varieties was examined under controlled drought and natural conditions in the years 2011–2013. The studied varieties were genotyped with the 1536‐SNP barley oligonucleotide assay. In experiments with controlled drought conditions, the grain yield, 1,000‐grain weight, number of productive tillers and length of the main stem were measured. Physicochemical properties such as the specific surface area, water adsorption energy, fractal dimension and nanopore radius of the plant leaves were determined and correlated with yield‐forming traits. Field trials were conducted over 3 years at 14 locations, where along with the yield‐related traits, monthly rainfall and average temperature were monitored. Five varieties of high yield and five varieties relatively stable under both semi‐controlled and natural conditions were distinguished. The yield‐related traits observed in various locations were related to environmental variables relevant to water availability. The sum of the rainfall in April and May was negatively correlated with the 1,000‐grain weight and positively with the plant height. Positive relationships were found between plant height and temperatures in June and July. Five markers detected earlier as linked to the quantitative trait loci in the mapping populations were identified to have a coherent effect among varieties of various pedigree.     

Simultaneous Use of Trace Metals, 210Pb and 137Cs in Floodplain Sediments of a Lowland River as Indicators of Anthropogenic Impacts

This study focuses on the distribution of selected trace metals, ¹³⁷Cs and ²¹⁰Pb, in floodplain deposits of the lowland Warta River (southern Poland) downstream of Cz?stochowa, a large city with an iron smelter. The depth profiles of trace metal (Zn, Pb, Cu, Ni, Cd and Mn), ²¹⁰Pb and ¹³⁷Cs contents in floodplain sediments were used to derive deposition rates on the floodplain for the twentieth century. The applicability of particular chronometric tools is considered within the context of their mutual relationships and confirmed by the consistency of the results. Deposition rate estimates for the past 50 years based on the vertical patterns of trace metal concentrations, which were correlated with particular events in the development of the smelter, range from 0.4 cm·year^?1 in profiles situated in backswamps far from the channel to over 1.1 cm·year^?1 in profiles of the natural levee adjacent to the river. Deposition rates based on ²¹⁰Pb inventories in the profiles range from 0.08 to 0.66 g·cm^?2·year^?1, which corresponds to linear sedimentation rates of 0.10 to 0.91 cm·year^?1, respectively. Dating of characteristic levels associated with peak fallout of ¹³⁷Cs gives sediment accretion rates resembling those obtained from trace metals and ²¹⁰Pb. The period of the highest sediment accumulation rate could be related to the highest loads of effluent from the iron smelter and city of Cz?stochowa, which were substantially reduced after the construction of effluent treatment plant.     

Toward a process monitoring of CNC wood router. Sensor selection and surface roughness prediction

The measurement of wood surface roughness is performed once the machining process is completed. It requires considerable time since the measurement is performed at slow speed. The objective of this study was to develop a method to evaluate the surface roughness of paper birch wood while routing. For this purpose, a number of transducers were mounted on the router spindle and also in the proximity of the workpiece and cutting zone. Signals were acquired during a wide range of cutting conditions and analyzed. Statistical regression and artificial neural networks were employed to establish relationships between the signals and the actual cutting depth and surface roughness. The sensor selection and the feasibility of the sensor placement were determined. The models were subjected to a validation procedure to confirm their performance. The placement of the microphone at constant distance from the cutting zone was determined to be the most useful one. A model able to predict the surface roughness of routed paper birch wood regardless of the depth of cut was produced. The performance of the model was valid independently of the length of the workpiece.